PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 895674
Common NameARALYDRAFT_895674
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARF
Protein Properties Length: 573aa    MW: 62519.7 Da    PI: 6.0274
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
895674genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.64.8e-23119220199
             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
             f k+ltpsd+++ g +++p+ +a++       +++++  ++l ++d +g +W++++iyr++++r++lt+GW++Fv++++L +gD+vvF+  ++   e++++v+
  895674 119 FAKILTPSDANNGGGFSVPRFCADSVfppldfQIDPPV-QKLYITDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFM--KKAADEMFMGVR 218
             89*****************9999999*****9666655.49************************************************..446777889998 PP

             -S CS
      B3  98 rk 99 
             r+
  895674 219 RT 220
             86 PP

2Auxin_resp88.31.4e-29274356183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+++a+++ +Fev Y+P a++seFvv++e+ve++++v +++G+R+kma+etedss++++ +G+v+++ + ++  W++S+W++L+
      895674 274 AINRAAKGLPFEVAYYPTAGWSEFVVRAEDVESSMSVFWTPGTRVKMAMETEDSSRITWfQGIVSSTYQ-ETGPWRGSPWKQLQ 356
                 678999*****************************************************9999999999.888*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-32112221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-27113224IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.323119221IPR003340B3 DNA binding domain
SMARTSM010191.3E-18119221IPR003340B3 DNA binding domain
CDDcd100179.69E-20119215No hitNo description
PfamPF023628.2E-21119219IPR003340B3 DNA binding domain
PfamPF065073.2E-24274356IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MSPPSATAGD INHRQVDPRI WRACAGASVQ IPLLYSRVYY FPQGHVEHCC PLISTLPSST  60
SPVPCLITSI QLLADPITDE VFAHLVLQPV TQEQFTPTNY SRFGRYDGDV DDNNKVTTFA  120
KILTPSDANN GGGFSVPRFC ADSVFPPLDF QIDPPVQKLY ITDIHGAVWD FRHIYRGTPR  180
RHLLTTGWSK FVNSKKLIAG DSVVFMKKAA DEMFMGVRRT PISSSGGGSS YYGGDEYNGY  240
YSQSSVAKED DGSAKKTFRR SGKGKLTAEA VTEAINRAAK GLPFEVAYYP TAGWSEFVVR  300
AEDVESSMSV FWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD  360
EPEILQNVKR VNPWQVEIVA NATQLHATFP PAKRLKYPQP GGFLSGDDGD IPYSQRGLSS  420
AAAPDPSPYM FPYSTFPAGM QGARQYDFGS FNPTGFIGEN PPQSCTNNFF SPLPTGLGKV  480
STEMNFGSPP SDNLSPNSNT TNLSSGNDLV GNRAPISAKP NSIRLFGKTI NVQEHSESGP  540
AESGLCEEDG SKESSDNETQ LSLSHGRGPP SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-641637751388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0027490.0BT002749.1 Arabidopsis thaliana clone C104833 auxin response factor ARF17 (At1g77850) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887703.10.0hypothetical protein ARALYDRAFT_895674
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLD7KV470.0D7KV47_ARALL; Auxin response factor
STRINGscaffold_202748.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17